DNA Damage Atlas


GSM6428016-iNeuron_d7_Gemcitabine_SAR-seq_rep2




Basic Information

Manual

Sample ID:   

SRR20749604


Source Project ID:   

GSE210312

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

Gemcitabine


Treatment Time:   

2 hours prior to cell harvesting


Treatment Dose:   

40uM


Genotype:   

WT


Harvested Time:   

day7


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

SAR-seq


Others:   

control: GSM5100403-input_for_SAR-seq_in_iNeuron


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM05603155107.365/
chr319345481719345573519345507335.3518/
chr1110266271010266366610266315834.5262/
chr1023286832232873462328709134.3409/
chr214142806414142876414142845434.2622/
chr418355781118355858518355810033.9522/
chr1058272779582733615827300432.6406/
chr883484962834854528348524232.6306/
chr1012698117612698179512698158831.9683/
chr2139322319393228573932268031.632/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM05603155107.365/
chr418355781118355842318355810042.8102/
chr319345481719345573519345507335.3518/
chr1012698123412698179512698158835.2734/
chr1082854249828547798285447934.947/
chr214142806414142875414142845434.7587/
chr1110266271010266366610266315834.5262/
chr1023286832232873462328709134.3409/
chr1058272779582733615827300432.6406/
chr883484962834854528348524232.6306/
Download the Full Merged Peak List



Motif Analysis

Manual





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