Sample Detail

Basic Information

Manual

Sample ID:

SRR20749603

Source Project ID:

GSE210312

Cell Type:

iNeuron

Organism:

Homo sapiens

Treatment:

AraC

Treatment Time:

18 hours prior to cell harvesting

Treatment Dose:

20uM

Genotype:

Harvested Time:

day7

Layout:

SINGLE

Instrument model:

NextSeq 550

Technique:

SAR-seq

Others:

control: GSM5100403-input_for_SAR-seq_in_iNeuron

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chrM	0	5604	3217	100.27	/
chr10	126981204	126981806	126981582	36.3281	/
chr21	22437699	22438309	22437907	36.3188	/
chr2	44028450	44029083	44028733	36.2371	/
chr2	18481043	18481542	18481248	36.1178	/
chr4	151392465	151393200	151392863	35.6666	/
chr16	78518127	78518717	78518445	35.6181	/
chr14	27563212	27563841	27563495	35.335	/
chr3	173710435	173711224	173710761	33.9478	/
chr3	64093726	64094466	64094095	33.6928	/

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chrM	0	5604	3217	100.27	/
chr21	22437699	22438267	22437907	39.0044	/
chr4	151392465	151393172	151392863	37.0791	/
chr10	126981211	126981806	126981582	36.7555	/
chr2	44028450	44029083	44028733	36.2371	/
chr2	18481043	18481542	18481248	36.1178	/
chr4	183557842	183558477	183558156	36.0108	/
chr1	38723715	38724407	38724109	35.927	/
chr3	173710477	173711224	173710761	35.8565	/
chr14	27563221	27563841	27563495	35.8479	/

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download