DNA Damage Atlas

GSM6428018-iNeuron_d7_AraC_SAR-seq_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR20749602


Source Project ID:   

GSE210312

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

AraC


Treatment Time:   

18 hours prior to cell harvesting


Treatment Dose:   

20uM


Genotype:   

WT


Harvested Time:   

day7


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

SAR-seq


Others:   

control: GSM5100403-input_for_SAR-seq_in_iNeuron


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM05606319298.5176/
chr138723715387244073872408235.9462/
chr835481520354820843548174235.8959/
chr2122437631224382672243792835.6347/
chr415139245315139317215139285235.173/
chr317371047717371125217371094233.9688/
chr1491356744913573209135697333.9485/
chr1012698121112698181012698158733.9139/
chr1037224143722989372281133.6471/
chr1620227807202284382022798933.6175/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM05604319298.5527/
chr2122437699224382672243792839.9009/
chr244028450440290834402875738.86/
chr418355784218355847718355813137.8671/
chr1678518127785187177851844636.305/
chr218481043184815421848124636.2792/
chr418168629218168671618168644936.178/
chr138723715387244073872408235.9462/
chr835481520354820843548174235.8959/
chr415139246515139317215139285235.77/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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