DNA Damage Atlas


GSM6428027-iMacrophage_WT_PARPi_SAR-seq




Basic Information

Manual

Sample ID:   

SRR20749593


Source Project ID:   

GSE210312

Cell Type:   

iMacrophage


Organism:   

Mus musculus


Treatment:   

Aphidicolin + Olaparib


Treatment Time:   

24hrs + 20hrs (prior to cell harvesting)


Treatment Dose:   

4uM Aphidicolin + 5uM Olaparib


Genotype:   

WT


Harvested Time:   

day2


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

SAR-seq


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM065082611215.764/
chr124613001246132322461311573.4299/
rDNA41942436094284143.9034/
chrUn_JH58430410672110695110683541.774/
chr966949126669501266694964341.5161/
chr894825017948255309482537533.0649/
rDNA172757730.7164/
rDNA62598789760430.2404/
rDNA40637409184078828.7046/
chr216486768816486805416486790027.2237/
Download the Full Peak List



Motif Analysis

Manual





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