DNA Damage Atlas


GSM6428029-iMacrophage_PARPi_SAR-seq




Basic Information

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Sample ID:   

SRR20749591


Source Project ID:   

GSE210312

Cell Type:   

iMacrophage


Organism:   

Mus musculus


Treatment:   

Aphidicolin + Olaparib


Treatment Time:   

24hrs + 20hrs (prior to cell harvesting)


Treatment Dose:   

4uM Aphidicolin + 5uM Olaparib


Genotype:   

WT


Harvested Time:   

day2


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

SAR-seq


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM06494116372.6006/
rDNA40640409124077648.5629/
chr1044691367446926364469216544.8356/
chrX16998017116998153416998109443.9251/
chr1550802333508027585080248440.7676/
chr1839240854392421693924123139.0927/
chr313795397713795478113795423338.3349/
chr512451285112451344212451312037.928/
chr834845635348464313484592537.7863/
chr245230710452311904523099537.645/
Download the Full Peak List



Motif Analysis

Manual





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