DNA Damage Atlas


GSM6428030-iMacrophage_ddC_SAR-seq




Basic Information

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Sample ID:   

SRR20749590


Source Project ID:   

GSE210312

Cell Type:   

iMacrophage


Organism:   

Mus musculus


Treatment:   

Aphidicolin + ddC


Treatment Time:   

24hrs + 20hrs (prior to cell harvesting)


Treatment Dose:   

4uM Aphidicolin + 40uM ddC


Genotype:   

WT


Harvested Time:   

day2


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

SAR-seq


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM065014060114.218/
chrUn_JH58430410673310694710683930.9912/
chrX16998035716998154116998106330.1007/
rDNA25404267202657729.7794/
rDNA40647409164080326.896/
rDNA41935437484221123.5374/
chr124613005246132272461311523.2356/
rDNA13529199661573921.418/
chrUn_JH58430469542697656965221.329/
chr1839240899392415313924115720.8817/
Download the Full Peak List



Motif Analysis

Manual





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