DNA Damage Atlas


GSM6428031-iMacrophage_NT_SAR-seq




Basic Information

Manual

Sample ID:   

SRR20749589


Source Project ID:   

GSE210312

Cell Type:   

iMacrophage


Organism:   

Mus musculus


Treatment:   

Aphidicolin


Treatment Time:   

24hrs (prior to cell harvesting)


Treatment Dose:   

4uM


Genotype:   

WT


Harvested Time:   

day2


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

SAR-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM065922582119.938/
rDNA41495440364219418.2734/
chrUn_JH58430410664410703510683816.9894/
chrUn_JH58430497738985229819416.0046/
chrUn_JH58430472662734387313114.8725/
chr930202963020705302050413.1246/
chr930019543003178300215210.9639/
chr966949006669501886694961710.6156/
chrUn_JH58430458511615186014010.5324/
rDNA1112762610.488/
Download the Full Peak List



Motif Analysis

Manual





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