DNA Damage Atlas


GSM6428057-iNeuron_TDGdegron_NT_ddC_S1ENDseq




Basic Information

Manual

Sample ID:   

SRR20749653


Source Project ID:   

GSE210314

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

ddC


Treatment Time:   

18 hrs prior to cell harvesting


Treatment Dose:   

40μM


Genotype:   

TDGdegron


In-situ Treatment:   

Exo VII + Exo T + S1


Harvested Time:   

day7


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.063571



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random34289349883442722.851+
chr1942665486426666054266618513.4007+
chr1112535195012535298112535259812.9479+
chr637557324375585873755778012.8097+
chr1765571356655719546557156112.2584-
chr1025163620251647162516411312.0392+
chr2249765825497672864976661111.8307+
chr1311260958311261069111261029311.6767+
chr129777731297783362977811511.5214+
chr726520244265210902652051111.3708+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr10524262825242628552426285112.346-
chr218845199018845243618845221349.7457-
chr741873104189286418776047.2915+
chr612783331912783406912783373735.5718+
chr2094607249461286946092932.0752-
chr928707582287080412870782730.0611-
chr1822253011222536262225327728.9784+
chr1536045691360459823604569628.8498+
chr868865960688662106886596128.6228+
chr159207255592078695920766228.4835+
Download the Full Merged Peak List



Motif Analysis

Manual





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