DNA Damage Atlas


GSM6428058-iNeuron_WT_controlfor_sgTDG_ddC_S1ENDseq




Basic Information

Manual

Sample ID:   

SRR20749649


Source Project ID:   

GSE210314

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

ddC


Treatment Time:   

18 hrs prior to cell harvesting


Treatment Dose:   

40μM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + S1


Harvested Time:   

day7


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.015161



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr221593535421593557921593536049.0493+
chr1112535195012535285312535259842.9433+
chr637557324375585223755778039.7023+
chr1025163761251646982516411338.9832+
chr1012802766312802835512802792137.3999-
chr1279924583799253087992481632.5337+
chr916202651162037651620332028.4381+
chr1942665549426667994266613028.01+
chr9_gl000199_random33994348133442728.007+
chr1362950725629512576295097727.9034+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr7418723841883754187969730.172-
chr2222515018222515022222515018524.761+
chr1227508108227508669227508339370.765+
chr18710187727101877571018773155.049+
chr3193454344193455828193455335102.876+
chr1484131542841315488413154290.9061+
chrX39655754396557583965575790.4002-
chr517620177817620178017620177881.9062+
chr1220034718200347322003472661.1624+
chr252939539529395455293953949.7167+
Download the Full Merged Peak List



Motif Analysis

Manual





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