DNA Damage Atlas


GSM6428061-iNeuron_TDGdegron_NT_ddC_S1ENDseq_rep2




Basic Information

Manual

Sample ID:   

SRR20749647


Source Project ID:   

GSE210314

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

ddC


Treatment Time:   

18 hrs prior to cell harvesting


Treatment Dose:   

40μM


Genotype:   

TDGdegron


In-situ Treatment:   

Exo VII + Exo T + S1


Harvested Time:   

day7


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.015187



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr741873104189286418798288.8426+
chr218845199018845257418845221369.7116-
chr612783331912783406912783373764.7305+
chr928707582287080412870782755.6392-
chr2094607249461286946092954.997-
chr122750809922750885922750851949.2956-
chr1537368255373687663736851148.4498-
chr1567892611678932736789289445.7461+
chr314691720014691741314691741243.826-
chr1310126256010126329210126295843.504+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr15761158087611580976115808197.434+
chr7111933926111933929111933926143.863+
chr10524262825242628552426282112.346+
chr138802679388026863880267965.8618+
chr218845199018845243618845221349.7457-
chr741873104189286418798247.2915+
chr240693751406937744069375146.6726+
chr1527087316270873252708732537.5474+
chr612783331912783406912783373735.5718+
chr2094607249461286946092932.0752-
Download the Full Merged Peak List



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab