DNA Damage Atlas


GSM6428062-iNeuron_WT_controlfor_sgTDG_ddC_S1ENDseq_rep2




Basic Information

Manual

Sample ID:   

SRR20749651


Source Project ID:   

GSE210314

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

ddC


Treatment Time:   

18 hrs prior to cell harvesting


Treatment Dose:   

40μM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + S1


Harvested Time:   

day7


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.010692



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr74187238418837541879821443.14+
chr1227507905227508669227508519537.528-
chr3193454283193455828193455530176.787-
chr218845198618845243618845221368.7076-
chr833273010332735803327337353.8852+
chr653715514537157275371551453.4369+
chr2051841435518424025184210652.9145-
chr1060639960703560660351.0179+
chr1822253055222536262225327750.2207+
chr619920907199215751992113449.5912-
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr7418723841883754187982730.172+
chr2222515018222515022222515018524.761+
chr1227508108227508669227508519370.765-
chr3193454344193455828193455530102.876-
chr1363492929634929346349293192.3826+
chr1484131542841315488413154890.9061-
chr722288750222887692228875081.8644+
chr1236901403690145369014179.3989+
chr122684208222684209722684208275.6779+
chr176019407601947760194069.2817+
Download the Full Merged Peak List



Motif Analysis

Manual





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