DNA Damage Atlas

GSM6428064-iNeuron_ENDseq

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR20749652


Source Project ID:   

GSE210314

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

day7


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.003019


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random34183350783450243.5849-
chrUn_gl00021240121416034091015.3472-
chr2233658603336590923365889214.5615+
chr9_gl000199_random1290011314521313349.38078-
chrUn_gl0002281155061199901185738.54758-
chrX3403583334036183340360648.43267-
chrUn_gl0002168014681154807017.94453-
chr19_gl000208_random1110073127.77086-
chr62918979929190124291901246.92214-
chrUn_gl0002251314001323201318016.77511-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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