DNA Damage Atlas

GSM6428065-iNeuron_S1ENDseq

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR20749645


Source Project ID:   

GSE210314

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + S1


Harvested Time:   

day7


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.005456


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random33827350773445033.1056+
chr2130671634306718353067163526.942+
chrUn_gl00021240485413574091525.5231-
chr710147054410147079310147056915.9656+
chrUn_gl00021680296811498071614.477-
rDNA37460647814.2723+
chr1231993157319937063199346913.9122+
chrUn_gl00022015691016074515905913.7291-
chr195298459530476953013512.3028+
chr318563817018563875718563837312.2384+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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