DNA Damage Atlas


GSM6428066-iNeuron_ddC_ENDseq




Basic Information

Manual

Sample ID:   

SRR20749644


Source Project ID:   

GSE210314

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

ddC


Treatment Time:   

18 hrs prior to cell harvesting


Treatment Dose:   

40μM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

day7


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.002178



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random33548351743442725.2936+
chr19_gl000208_random2267213112.509+
chrUn_gl00021240375413234084611.8896+
chr316674710416674786516674748711.815+
chrUn_gl00021462894662006506510.7486+
chr1765571346655720166557156110.3056-
chr1942665806426667554266609510.1544-
chr63755709037558470375577199.10283+
chr195075808507745550766819.0507-
chr224976634849767254497666118.68952+
Download the Full Peak List



Motif Analysis

Manual





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