DNA Damage Atlas


GSM6428067-iNeuron_ddC_S1ENDseq




Basic Information

Manual

Sample ID:   

SRR20749643


Source Project ID:   

GSE210314

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

ddC


Treatment Time:   

18 hrs prior to cell harvesting


Treatment Dose:   

40μM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + S1


Harvested Time:   

day7


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.004987



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1476660216766607547666052424.8266-
chr1310562092010562115910562094423.5449+
chr9_gl000199_random33883352143453320.0861-
chr354455572544564645445609320.0207+
chr571460266714608517146047618.7302-
chr711772520117729641177272618.7-
chr1112535220612535319912535259816.9579+
chr1765571352655719556557157716.6216+
chr2094606839461286946092916.5512-
chr220899766620899816720899790316.4877-
Download the Full Peak List



Motif Analysis

Manual





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