DNA Damage Atlas


GSM6428068-iNeuron_AraC_S1ENDseq




Basic Information

Manual

Sample ID:   

SRR20749642


Source Project ID:   

GSE210314

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

AraC


Treatment Time:   

18 hrs prior to cell harvesting


Treatment Dose:   

20μM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + S1


Harvested Time:   

day7


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.005589



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random34007352583451732.9984-
chr915168853151693841516914816.0591+
chr466989249669897206698947015.354-
chrUn_gl00021240468412134084615.329+
chr419185684191865171918598615.1927+
chr640752057407528894075236714.6315+
chrUn_gl00021462272667856506613.9878+
chr812332119812332174612332146013.2515-
chr214142793414142846614142838712.6872-
chr1950754755077558507605312.4984+
Download the Full Peak List



Motif Analysis

Manual





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