DNA Damage Atlas


GSM6428069-iNeuron_AraA_S1ENDseq




Basic Information

Manual

Sample ID:   

SRR20749641


Source Project ID:   

GSE210314

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

AraA


Treatment Time:   

18 hrs prior to cell harvesting


Treatment Dose:   

40μM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + S1


Harvested Time:   

day7


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.002574



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random33635353933451730.5288-
chrUn_gl00021240263414404084612.7125+
chr19_gl000208_random579616110.2897+
chrUn_gl0002145964166272650669.69956+
chr9_gl000199_random1289591317271313339.15298-
chrUn_gl0002281149821196401185738.50685-
chrUn_gl0002168011581073807077.37811-
chr223365860633659416336588925.89302+
chrUn_gl0002161416061433041419004.73932-
chrUn_gl0002431923422419217874.69784+
Download the Full Peak List



Motif Analysis

Manual





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