DNA Damage Atlas


GSM6428070-iNeuron_ddC_pairedwithAraA_S1ENDseq




Basic Information

Manual

Sample ID:   

SRR20749636


Source Project ID:   

GSE210314

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

ddC


Treatment Time:   

18 hrs prior to cell harvesting


Treatment Dose:   

40μM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + S1


Harvested Time:   

day7


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.001482



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr215202653115202688915202687936.2946-
chr9_gl000199_random33635350893451727.8542-
chr1876751362767525267675211225.1325+
chr1950755035077695507617824.2307+
chr1570168183701698257016874217.5232-
chr236376795363774833637713117.1924+
chr218234996418235079418235057216.7839-
chr410515692810515762310515723716.7641-
chr718809982188110911881023916.5811+
chr814298094514298229914298162916.3119+
Download the Full Peak List



Motif Analysis

Manual





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