DNA Damage Atlas

GSM6428071-iNeuron_NT_pairedwithAraA_S1ENDseq

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR20749637


Source Project ID:   

GSE210314

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + S1


Harvested Time:   

day7


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.003123


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random33819353423451736.0181-
chrUn_gl00021240461414774084614.3276+
chr2233658536336593043365889211.045+
chr9_gl000199_random1289701314521313339.83242-
chrUn_gl0002281149801201101185717.54777-
chr61577084701577090741577087617.39855+
chrUn_gl0002251071061077111073216.36905-
chrUn_gl0002161630751648361635236.06291+
chr19_gl000208_random418022465.74467-
chrUn_gl0002168011581229807164.87616-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab