DNA Damage Atlas


GSM6428072-iMacrophage_ddC_S1ENDseq




Basic Information

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Sample ID:   

SRR20749635


Source Project ID:   

GSE210314

Cell Type:   

iMacrophage


Organism:   

Mus musculus


Treatment:   

Aphidicolin + ddC


Treatment Time:   

24 hrs + 20 hrs


Treatment Dose:   

4 µM Aphidicolin + 40 µM ddC


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + S1


Harvested Time:   

day2


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 2.172561



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563961181512394120182151.67-
chr176774122967741904677415191613.38-
chrUn_GL456389102151095210675765.779-
chr11646822076468265064682648678.462-
chr12935768529357769693577152622.54+
chr5146666452146666849146666701473.627-
chr6103314467103314858103314620403.459+
chr12970612969706192297061786340.571-
chr2920933209209402992093773340.006-
chrX143482877143483239143483012330.831+
Download the Full Peak List



Motif Analysis

Manual





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