DNA Damage Atlas


GSM6428073-Macrophage_WT_ddC_S1ENDseq




Basic Information

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Sample ID:   

SRR20749638


Source Project ID:   

GSE210314

Cell Type:   

iMacrophage


Organism:   

Mus musculus


Treatment:   

Aphidicolin + ddC


Treatment Time:   

24 hrs + 20 hrs


Treatment Dose:   

4 µM Aphidicolin + 40 µM ddC


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + S1


Harvested Time:   

day2


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 1.367642



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563961181512559120183110.57-
chrUn_GL456389983911155106811023.24-
chrX143482720143483298143483012300.833+
chr8837564238375751083756966132.431-
chr13116192496116193309116192970115.475-
chr292093153920941979209377392.2027-
chr1293576533935775869357714691.6434-
chr1767741002677420126774151989.2548-
chr871432769714333287143317087.3117-
chr514666622814666694914666670285.6926-
Download the Full Peak List



Motif Analysis

Manual





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