DNA Damage Atlas


GSM6428074-iMacrophage_TDGKO_ddC_S1ENDseq




Basic Information

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Sample ID:   

SRR20749634


Source Project ID:   

GSE210314

Cell Type:   

iMacrophage


Organism:   

Mus musculus


Treatment:   

Aphidicolin + ddC


Treatment Time:   

24 hrs + 20 hrs


Treatment Dose:   

4 µM Aphidicolin + 40 µM ddC


Genotype:   

TDG-/-


In-situ Treatment:   

Exo VII + Exo T + S1


Harvested Time:   

day2


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 1.54443



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563961149912576120185428.91-
chrUn_GL456389985111208106751338.4-
chrX143482651143483387143483017429.974+
chr17677408706774197467741519211.902-
chr12935764839357761693577141208.972-
chr13116192501116193126116192970163.898-
chr6103314088103314955103314644118.397+
chr11646824246468300364682648113.932-
chr8837563268375745783756966107.769-
chr9115350378115351032115350898100.593-
Download the Full Peak List



Motif Analysis

Manual





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