DNA Damage Atlas


GSM6428075-iMacrophage_ddA_S1ENDseq




Basic Information

Manual

Sample ID:   

SRR20749639


Source Project ID:   

GSE210314

Cell Type:   

iMacrophage


Organism:   

Mus musculus


Treatment:   

ddA


Treatment Time:   

20 hrs prior to cell harvesting


Treatment Dose:   

40μM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + S1


Harvested Time:   

day2


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 1.000137



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrY7021519702237970221031357.53+
chrY876772087679968767743498.708+
chr1154881948154882230154882008485.338+
chr18730588217305909473058879446.677+
chr14923195829232000992319879423.011-
chr14892056968920596189205751411.796+
chrUn_GL456396115021217712018405.527-
chr12114999966115000218115000178362.38-
chrY603539260356306035600358.117-
chr7106830132106830412106830190346.741+
Download the Full Peak List



Motif Analysis

Manual





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