DNA Damage Atlas


GSM6428076-iMacrophage_ddC_PairedwithOthers_S1ENDseq




Basic Information

Manual

Sample ID:   

SRR20749633


Source Project ID:   

GSE210314

Cell Type:   

iMacrophage


Organism:   

Mus musculus


Treatment:   

ddC


Treatment Time:   

20 hrs prior to cell harvesting


Treatment Dose:   

40μM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + S1


Harvested Time:   

day2


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.924511



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL456396118151217712018988.146-
chrY702101970223197022103619.825+
chr15931420589314238693142163442.391+
chrY100605411006077110060558440.665+
chr1154881946154882222154882008394.821+
chr7106830134106830406106830190317.956+
chr4100180805100181144100181019307.989-
chr14923195829232000892319864307.629-
chrY124312681243187112431478297.25-
chrY171431741714376817143381295.993-
Download the Full Peak List



Motif Analysis

Manual





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