DNA Damage Atlas


GSM6428077-iMacrophage_ddG_S1ENDseq




Basic Information

Manual

Sample ID:   

SRR20749640


Source Project ID:   

GSE210314

Cell Type:   

iMacrophage


Organism:   

Mus musculus


Treatment:   

ddG


Treatment Time:   

20 hrs prior to cell harvesting


Treatment Dose:   

40μM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + S1


Harvested Time:   

day2


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.731161



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563961145312185120181661.25-
chrUn_GL456389102051095510681600.698-
chr17677412296774170067741525584.149-
chr8837566048375712283756972469.89-
chr13116192760116193432116192970371.837-
chr12935765549357750993577142354.223-
chr14909110489091140990911255330.819-
chr8714327157143330471433171303.534-
chr5147611298147611812147611542266.294-
chr5146665694146667267146666702243.314-
Download the Full Peak List



Motif Analysis

Manual





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