DNA Damage Atlas


GSM6428078-iMacrophage_ddT_S1ENDseq




Basic Information

Manual

Sample ID:   

SRR20749632


Source Project ID:   

GSE210314

Cell Type:   

iMacrophage


Organism:   

Mus musculus


Treatment:   

ddT


Treatment Time:   

20 hrs prior to cell harvesting


Treatment Dose:   

40μM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + S1


Harvested Time:   

day2


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.880177



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrY7022038702253570221032181.15+
chrUn_GL456396118151217712018734.894-
chr19115369871153726611537198523.161-
chr1154881946154882223154882008491.781+
chr14923195849231988792319865432.109-
chr4127377468127377743127377680413.852-
chr3916658409166609491665881403.338+
chr14110528893110529157110528949381.18+
chrY356411773564164435641394377.595-
chr6974663949746667497466619375.96-
Download the Full Peak List



Motif Analysis

Manual





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