DNA Damage Atlas


GSM6428081-iNeuron_ddA_S1ENDseq




Basic Information

Manual

Sample ID:   

SRR20749629


Source Project ID:   

GSE210314

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

ddA


Treatment Time:   

18 hrs prior to cell harvesting


Treatment Dose:   

40μM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + S1


Harvested Time:   

day7


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.099341



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr74187858418837841879823183.91+
chr1227507822227508882227508519507.901-
chr3193455163193455960193455530374.757-
chr2051841509518421835184182963.6001+
chr9_gl000199_random34190352013448535.5951-
chrUn_gl00021240542414814091015.7373-
chrUn_gl00021680247812478071712.3348-
chr9_gl000199_random1291041316041313348.69542-
chrUn_gl0002281149861197501185657.60515-
chrUn_gl0002161166812040118986.12822-
Download the Full Peak List



Motif Analysis

Manual





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