DNA Damage Atlas


GSM6428082-iNeuron_ddT_S1ENDseq




Basic Information

Manual

Sample ID:   

SRR20749628


Source Project ID:   

GSE210314

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

ddT


Treatment Time:   

18 hrs prior to cell harvesting


Treatment Dose:   

40μM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + S1


Harvested Time:   

day7


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.015478



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr741878624188599418798221215+
chr12275081032275086362275085199021.57-
chr31934549471934556531934555303693.02-
chr20518417045184256651841829461.715+
chr9_gl000199_random34190348213448153.4932-
chrUn_gl00021240697413844092244.2796-
chrUn_gl00021680500808498071128.0682-
chrUn_gl00022510232910257410255418.6667-
chrUn_gl00022513357313398913377316.6677-
chr659975255997727599752515.1909+
Download the Full Peak List



Motif Analysis

Manual





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