DNA Damage Atlas


GSM6428083-iNeuron_ddC_paired_withddATG_S1ENDseq




Basic Information

Manual

Sample ID:   

SRR20749627


Source Project ID:   

GSE210314

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

ddC


Treatment Time:   

18 hrs prior to cell harvesting


Treatment Dose:   

40μM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + S1


Harvested Time:   

day7


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.016306



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr74187282418928541879822806.36+
chr12275080992275088452275085192166.29-
chr3193454340193456083193455530507.538-
chr20518413305184267851841829109.382+
chr1112535226112535281612535259835.7476+
chr1025163861251643312516411334.7992+
chr726520282265207122652045931.3633+
chr637557355375582853755778027.6363+
chr416132859016132879216132859227.5983+
chr1480307728803081918030794127.3572-
Download the Full Peak List



Motif Analysis

Manual





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