DNA Damage Atlas


GSM6428084-iNeuron_ddG_S1ENDseq




Basic Information

Manual

Sample ID:   

SRR20749626


Source Project ID:   

GSE210314

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

ddG


Treatment Time:   

18 hrs prior to cell harvesting


Treatment Dose:   

40μM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + S1


Harvested Time:   

day7


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.012211



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr741875154188295418798224595.6+
chr12275081282275089782275085197084.85-
chr31934551141934556441934555306112.23-
chr20518417255184237151841829769.571+
chrUn_gl00021240667418274092238.8079-
chr176231393762316137623141328.488+
chr9_gl000199_random34004350623445027.2621+
chrUn_gl00021680500808498071225.1992-
chr19_gl000208_random548315724.8134+
chr2036136201361364103613620521.2813+
Download the Full Peak List



Motif Analysis

Manual





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