DNA Damage Atlas


GSM6428085-iNeuron_POLBKD_ddC_S1ENDseq




Basic Information

Manual

Sample ID:   

SRR20749625


Source Project ID:   

GSE210314

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

ddC


Treatment Time:   

18 hrs prior to cell harvesting


Treatment Dose:   

40μM


Genotype:   

POLB KD


In-situ Treatment:   

Exo VII + Exo T + S1


Harvested Time:   

day7


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.045717



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random33819350713448233.5304-
chrUn_gl00021240305413374090917.4808-
chrUn_gl0002168016281116807068.65071-
chrUn_gl0002161450041457541451897.95723+
chrUn_gl0002281149831203461185637.43347-
chr19_gl000208_random07412776.8573-
chr9_gl000199_random1290921318191313275.82755-
chrUn_gl0002146097266285644065.77038-
chrUn_gl0002161620061648431635235.15683+
chrUn_gl0002251067781088581084064.70547-
Download the Full Peak List



Motif Analysis

Manual





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