DNA Damage Atlas


GSM6573501-PEM-seq_HEK293T_AsCas12a_VEGFA-1




Basic Information

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Sample ID:   

SRR21530250


Source Project ID:   

GSE213149

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

transfected with gRNA-AsCas12a plasmid


Genotype:   

WT


Harvested Time:   

3days


Targeted break:   

VEGFA-1 locus


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

PEM-seq


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1568132217681327886813243749187.8-
chrX11429400114296031142960316087.9-
chr1013657152136573601365736015701.2-
chrX22158789221590082215900814912.5-
chr489610598961260896126012998.4-
chr614443610714443630814443630812998.4-
chr213432699113432719513432699112807.2+
chr217601617622117601712744.7+
chr885508650855088558550885012744.7-
chr930861010308612153086101012744.7+
Download the Full Peak List



Motif Analysis

Manual





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