DNA Damage Atlas


GSM6573513-PEM-seq_HEK293T_AsCas12f1_VEGFA-2




Basic Information

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Sample ID:   

SRR21530238


Source Project ID:   

GSE213149

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

transfected with gRNA-AsCas12f1 plasmid


Genotype:   

WT


Harvested Time:   

3days


Targeted break:   

VEGFA-2 locus


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

PEM-seq


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr776572580765727867657278647475.5-
chr643147640431478464314784635606.6-
chr131922493192459319224934928.4+
chr650315850336850315834928.4+
chr1956701905670413567019032892.2+
chr1568132386681327676813238632086.5+
chr122798765022798790722798765028540.7+
chr2059787522597877235978752224328.2+
chr2126087684260878852608788424328.2-
chr231430276314304773143047624328.2-
Download the Full Peak List



Motif Analysis

Manual





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