DNA Damage Atlas


GSM6573514-PEM-seq_HEK293T_Un1Cas12f1_VEGFA-2




Basic Information

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Sample ID:   

SRR21530237


Source Project ID:   

GSE213149

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

transfected with gRNA-Un1Cas12f1 plasmid


Genotype:   

WT


Harvested Time:   

3days


Targeted break:   

VEGFA-2 locus


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

PEM-seq


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1568132222681327416813238734295.5+
chr220809351620809371720809351632201.5+
chr1059695797596960005969579731884.2+
chr326989473269896742698947324151.1+
chr652147779521479815214798124031.5-
chr122828082422828102822828082423795.9+
chr740254763402549724025476323226.6+
chr175691175726375726318387.8-
chr240875089408752904087528916100.7-
chr122866062622866082822866082616021-
Download the Full Peak List



Motif Analysis

Manual





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