DNA Damage Atlas


GSM6573515-PEM-seq_HEK293T_PlmCas12e_VEGFA-2




Basic Information

Manual

Sample ID:   

SRR21530236


Source Project ID:   

GSE213149

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

transfected with gRNA-PlmCas12e plasmid


Genotype:   

WT


Harvested Time:   

3days


Targeted break:   

VEGFA-2 locus


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

PEM-seq


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr6427029524270315742702952118256+
chr12587750358779125877708103727-
chr2019924361992648199264885763.3-
chr1568132375681328006813245885561.5+
chr1015963476159636801596367659417.7-
chr1090840590861090840559127.9+
chr1719325924193261291932592459127.9+
chr641596483415966904159648358556.6+
chr120963903620963924520963923657996.2-
Download the Full Peak List



Motif Analysis

Manual





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