DNA Damage Atlas


GSM6573518-PEM-seq_HEK293T_LbCas12a_COL8A1




Basic Information

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Sample ID:   

SRR21530233


Source Project ID:   

GSE213149

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

transfected with gRNA-LbCas12a plasmid


Genotype:   

WT


Harvested Time:   

3days


Targeted break:   

COL8A1 locus


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

PEM-seq


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1568132230681327746813238217296+
chr1226826378268266452682658713214.9-
chrX11639852511639876411639873412302.6-
chr732351426323517153235165012208.9-
chr416502582816502607016502605110935-
chr111188173011188203611188193610569.7-
chrX1166378211166380651166380259640.37-
chr22143349121433709214335019441.37+
chr35091846150918669509186688481.67-
chr121031563541031565641031563548400.89+
Download the Full Peak List



Motif Analysis

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