DNA Damage Atlas


GSM6573519-PEM-seq_HEK293T_SpCas9_COL8A1




Basic Information

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Sample ID:   

SRR21530232


Source Project ID:   

GSE213149

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

transfected with gRNA-SpCas9 plasmid


Genotype:   

WT


Harvested Time:   

3days


Targeted break:   

COL8A1 locus


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

PEM-seq


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr3191525431191526671191525913195389+
chr313110593813110638813110614844545.4-
chr1568132218681327986813238310598.7+
chr47923533379235540792353333873.51+
chr122682637926826622268265793299.66-
chr61437723101437725141437723103275.4+
chrX5183695751837170518371703137-
chr145988007359880295598802823009.83-
chr106940612569406332694061252582.34+
chr91990723019907437199074372582.34-
Download the Full Peak List



Motif Analysis

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