DNA Damage Atlas


GSM6573522-PEM-seq_HEK293T_CasMINI-ge4.1_COL8A1




Basic Information

Manual

Sample ID:   

SRR21530229


Source Project ID:   

GSE213149

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

transfected with gRNA-CasMINI-ge4.1 plasmid


Genotype:   

WT


Harvested Time:   

3days


Targeted break:   

COL8A1 locus


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

PEM-seq


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr393563679356955935659425229+
chr396953621969542109695385518579.9+
chr1568132263681328036813238316663.1+
chr416502582716502605716502605114802.9-
chr1226826377268266452682658713611.4-
chrX11639851911639875911639873311146.2-
chr686469071864692958646907110856.7+
chr35892039858920666589205989981.71-
chr73235142732351700323516509798.89-
chrX5183694751837181518371709353.49-
Download the Full Peak List



Motif Analysis

Manual





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