DNA Damage Atlas


GSM6573523-PEM-seq_HEK293T_AsCas12f1_COL8A1




Basic Information

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Sample ID:   

SRR21530228


Source Project ID:   

GSE213149

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

transfected with gRNA-AsCas12f1 plasmid


Genotype:   

WT


Harvested Time:   

3days


Targeted break:   

COL8A1 locus


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

PEM-seq


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr398092005980922689809200541329.1+
chr1775764797577160757667937242.8-
chr2217190681171908851719068135521.5+
chr310039316810039337310039336835348.2-
chr1573288023732882297328822335176.6-
Download the Full Peak List



Motif Analysis

Manual





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