DNA Damage Atlas


GSM6573524-PEM-seq_HEK293T_Un1Cas12f1_COL8A1




Basic Information

Manual

Sample ID:   

SRR21530227


Source Project ID:   

GSE213149

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

transfected with gRNA-Un1Cas12f1 plasmid


Genotype:   

WT


Harvested Time:   

3days


Targeted break:   

COL8A1 locus


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

PEM-seq


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrX51836944518371705183717017734.6-
chr111188173411188201111188193616880.9-
chr1568132220681326646813238316549.6+
chr732351450323516553235165016292.7-
chr416502584516502605416502605112784.7-
chr103645071536450916364509159970.19-
chr118422098842230084222989920.83-
chr68923279889233006892327989634.65+
chrX9287400992874220928740099497.67+
chr35892043858920666589206668789.51-
Download the Full Peak List



Motif Analysis

Manual





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