DNA Damage Atlas


GSM6573527-PEM-seq_HEK293T_PlmCas12e-R1-v2_COL8A1




Basic Information

Manual

Sample ID:   

SRR21530224


Source Project ID:   

GSE213149

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

transfected with gRNA-PlmCas12e-R1-v2 plasmid


Genotype:   

WT


Harvested Time:   

3days


Targeted break:   

COL8A1 locus


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

PEM-seq


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr812233759412233779612233759434792.6+
chr732351424323517023235165018057.8-
chr416502582416502606816502603017830.9-
chr1568132293681327196813238310998.6+
chr919907194199074381990743510972.9-
chrX11639853311639876111639873310275-
chr22143347721433698214334989086.12+
chr58730716387307372873071638006.51+
chr11118817291118819981118819297464.8-
chrX5183694651837173518371467371.63-
Download the Full Peak List



Motif Analysis

Manual





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