DNA Damage Atlas


GSM6573528-PEM-seq_HEK293T_LbCas12a_NLRC4




Basic Information

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Sample ID:   

SRR21530223


Source Project ID:   

GSE213149

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

transfected with gRNA-LbCas12a plasmid


Genotype:   

WT


Harvested Time:   

3days


Targeted break:   

NLRC4 locus


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

PEM-seq


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1568132216681327816813238275729.7+
chr135721984157220044572198418029.52+
chr121173120511731407117314056051.95-
chr121303059513030797130307976051.95-
chrX7308664873086850730868506051.95-
chr139182999091830194918301905992.62-
chr24166898741669192416691925963.38-
chr191121494811215154112149485934.44+
chr22988527729885483298852775934.44+
chr11711433821711435901711435825877.37-
Download the Full Peak List



Motif Analysis

Manual





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