DNA Damage Atlas


GSM6573538-PEM-seq_HEK293T_LbCas12a_NUDT16




Basic Information

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Sample ID:   

SRR21530213


Source Project ID:   

GSE213149

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

transfected with gRNA-LbCas12a plasmid


Genotype:   

WT


Harvested Time:   

3days


Targeted break:   

NUDT16 locus


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

PEM-seq


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1568132224681327966813238275450.9+
chr1112029085412029105812029085430959.8+
chr494295917942965319429632430858.9+
chr1554178648541791045417890430009.2+
chr715060531215060551315060551326184.9-
chr418681135418681155618681155626055.2-
chr122330278522330298922330278625799.8+
chr119773199119773219619773219625673.9-
chr1111387850011387870811387870825303.6-
chr1178417259784174647841746420539.2-
Download the Full Peak List



Motif Analysis

Manual





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