DNA Damage Atlas


GSM6573539-PEM-seq_HEK293T_SpCas9_NUDT16




Basic Information

Manual

Sample ID:   

SRR21530212


Source Project ID:   

GSE213149

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

transfected with gRNA-SpCas9 plasmid


Genotype:   

WT


Harvested Time:   

3days


Targeted break:   

NUDT16 locus


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

PEM-seq


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr15541785865417911854178902198064-
chrX399109113991163939911408111337-
chr4942961129429684794296324104763+
chr1568132235681328036813238371350.1+
chr121573070521573116621573095650548.7-
chr1012243741512243761712243741515047.1+
chr413912969113912989213912989110081.3-
chr953272395327440532743910081.3-
chr123129841123129861323129861110031.4-
chr61261077751261079781261079759981.98-
Download the Full Peak List



Motif Analysis

Manual





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