DNA Damage Atlas


GSM6573540-PEM-seq_HEK293T_CasMINI_NUDT16




Basic Information

Manual

Sample ID:   

SRR21530211


Source Project ID:   

GSE213149

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

transfected with gRNA-CasMINI plasmid


Genotype:   

WT


Harvested Time:   

3days


Targeted break:   

NUDT16 locus


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

PEM-seq


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1568132222681328036813244759965.4-
chr368750745687509486875074518554.1+
chr1255760135576214557621314054-
chr313820764913820785013820785014054-
chr325843960258441612584416014054-
chr312950674112950694312950694313984.4-
chrX20804393208045952080459313984.4-
chr313409114713409135013409135013915.6-
chr380227762802279658022776213915.6+
chr887305018873052218730522113915.6-
Download the Full Peak List



Motif Analysis

Manual





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