DNA Damage Atlas


GSM6573544-PEM-seq_HEK293T_Un1Cas12f1_NUDT16




Basic Information

Manual

Sample ID:   

SRR21530207


Source Project ID:   

GSE213149

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

transfected with gRNA-Un1Cas12f1 plasmid


Genotype:   

WT


Harvested Time:   

3days


Targeted break:   

NUDT16 locus


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

PEM-seq


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1568132222681326596813238311949.5+
chr912271775612271796112271775610613.7+
chr51268964431268966481268964438490.95+
chr31292901491292903581292903578328.44-
chr16157159861571813615717988096.02-
chr204896181548962016489618156494.94+
chr31273554471273556481273554476494.94+
chr91358425921358427941358427946462.79-
chr203315535633155559331553566430.95+
chr72314381623144019231438166430.95+
Download the Full Peak List



Motif Analysis

Manual





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