DNA Damage Atlas


GSM6573553-PEM-seq_HEK293T_AsCas12f1_HBB




Basic Information

Manual

Sample ID:   

SRR21530198


Source Project ID:   

GSE213149

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

transfected with gRNA-AsCas12f1 plasmid


Genotype:   

WT


Harvested Time:   

3days


Targeted break:   

HBB locus


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

PEM-seq


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1346515613465158154651581522656.7-
chr1113255620132558371325582021090.6-
chr531957522319577233195752217077.1+
chr981996229819964328199622916908.8+
chr1760219279602194846021927916743.9+
chr353970935539711405397093516743.9+
chr1568132403681327956813245114593.9+
chr1012542353012542373112542373011384.7-
chr110262070810262090910262090811384.7-
chr117077985717078005817077985711384.7+
Download the Full Peak List



Motif Analysis

Manual





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