DNA Damage Atlas

GSM6573561-PEM-seq_HEK293T_AsCas12a_INFg

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR21530185


Source Project ID:   

GSE213149

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

transfected with gRNA-AsCas12a plasmid


Genotype:   

WT


Harvested Time:   

3days


Targeted break:   

INFg locus


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

PEM-seq


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1568132251681327676813263224931.2-
chr316920427516920447616920447612800.5-
chr1379828283798284857982828312737.1+
chr151698246516984485169824612737.1+
chr1577898245778984477789824512737.1+
chr1610151771015379101517712737.1+
chr312497550012497570212497570012737.1-
chr1050450495045252504524912674.4-
chr1773536836735370417353683612550.7+
chr118636396918636417518636396912489.8+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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