DNA Damage Atlas

GSM6573562-PEM-seq_HEK293T_CasMINI-ge4.1_INFg

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR21530184


Source Project ID:   

GSE213149

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

transfected with gRNA-CasMINI-ge4.1 plasmid


Genotype:   

WT


Harvested Time:   

3days


Targeted break:   

INFg locus


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

PEM-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12623062566230670862306483258897-
chr1254407127544075405440732875294.3-
chr1265847842658480596584784222626.7+
chr1568132222681327896813263220205.7-
chr1267677367676775926767737314548.1+
chr124016099524016119724016099512153.4+
chr999038104990383069903810412153.4+
chr1678287226782874307828722612034.3+
chr1264222311642225166422231111975.6+
chr1270315647703158547031584711859.9-
Download the Full Peak List


Visualization

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Motif Analysis

Manual





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