DNA Damage Atlas


GSM6573568-PEM-seq_HEK293T_LbCas12a_CLIC4




Basic Information

Manual

Sample ID:   

SRR21530178


Source Project ID:   

GSE213149

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

transfected with gRNA-LbCas12a plasmid


Genotype:   

WT


Harvested Time:   

3days


Targeted break:   

CLIC4 locus


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

PEM-seq


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrX40936733409379384093762046476+
chr922746642227487982274736116208.8-
chr1568132245681327676813238214591+
chr164319375431959143193758296.83+
chr93511411835114321351141216621.11+
chr23255203332552237325520336588.66+
chrX1276270341276272401276272346524.69-
chr21099229331099231421099231426431.03-
chr22363193672363195772363195676400.41-
chr166783312267833338678333226222.62-
Download the Full Peak List



Motif Analysis

Manual





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